getClusterNames: Get name of each cluster

Description Usage Arguments Value Examples

View source: R/extractCorrelationScores.R

Description

Get name of each cluster as parameter:chrom:cluster

Usage

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getClusterNames(clustList)

Arguments

clustList

list of cluster assignments

Value

array of cluster names

Examples

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library(GenomicRanges)

# load data
data('decorateData')

# Evaluate hierarchical clustering
# adjacentCount is the number of adjacent peaks considered in correlation
treeList = runOrderedClusteringGenome( simData, simLocation)

# Choose cutoffs and return cluster
treeListClusters = createClusters( treeList, method = "meanClusterSize", meanClusterSize=c( 10, 20, 30, 40, 50) )

# Name of each cluster is parameter:chrom:cluster
getClusterNames( treeListClusters)

GabrielHoffman/decorate documentation built on July 26, 2021, 12:18 a.m.