API for GabrielHoffman/decorate
Differential Epigenetic Coregulation Test

Global functions
.countClusters Source code
.evalDiffCorr Man page Source code
[,epiclustDiscreteListContain,ANY,ANY,ANY-method Man page
`:=` Source code
addLegend Source code
boxM Source code
boxM_basic Source code
boxM_fast Man page Source code
boxM_permute Man page Source code
clustIter Source code
collapseClusters Man page Source code
combineResults Man page Source code
corSubsetPairs Man page Source code
corrMatrix.test Man page Source code
countClusters Man page
countClusters,epiclustDiscreteList-method Man page
countClusters,epiclustDiscreteListContain-method Man page
createClusters Man page Source code
createCorrelationMatrix Man page Source code
decorateData Man page
delaneau.score Source code
delaneau.test Source code
det_partial Source code
epiclust-class Man page
epiclustDiscreteList-class Man page
epiclustDiscreteListContain-class Man page
epiclustList-class Man page
evalDiffCorr Man page
evalDiffCorr,EList,ANY,GRanges,list,ANY,ANY,ANY,ANY,ANY,ANY,ANY- Man page
evalDiffCorr,EList,ANY,GRanges,list-method Man page
evalDiffCorr,data.frame,ANY,GRanges,list,ANY,ANY,ANY,ANY,ANY,ANY Man page
evalDiffCorr,data.frame,ANY,GRanges,list-method Man page
evalDiffCorr,matrix,ANY,GRanges,list,ANY,ANY,ANY,ANY,ANY,ANY,ANY Man page
evalDiffCorr,matrix,ANY,GRanges,list-method Man page
evaluateCorrDecay Man page Source code
filterClusters Man page Source code
getFeaturesInCluster Man page Source code
getFeaturesInClusterList Man page Source code
getPeakDistances Man page Source code
getSubset Man page
getSubset,epiclust,GRanges-method Man page
getSubset,epiclustList,GRanges-method Man page
get_exon_coords Man page Source code
jaccard Man page Source code
makeImageRect Man page Source code
metadata Man page
plotClusterSegments Man page Source code
plotCompareCorr Man page Source code
plotCorrTriangle Man page Source code
plotDecorate Man page Source code
plotEnsGenes Man page Source code
plotGenes Man page
plotPairwiseScatter Man page Source code
plotScatterPairs Man page Source code
retainClusters Man page Source code
runFastStat Man page Source code
runOrderedClustering Man page Source code
runOrderedClusteringGenome Man page Source code
runSled2 Source code
sLEDresults-class Man page
scoreClusters Man page Source code
simData Man page
simLocation Man page
summary,sLEDresults-method Man page
whichCluster Man page Source code
GabrielHoffman/decorate documentation built on July 19, 2019, 7:15 p.m.