getFeaturesInCluster: Get feature names in selected cluster

In GabrielHoffman/decorate: Differential Epigenetic Coregulation Test

Get feature names in selected cluster

Description

Get feature names in selected cluster given chrom and clusterid

Usage

getFeaturesInCluster(treeListClusters, chrom, clustID, id)

Arguments

treeListClusters	from createClusters()
chrom	chromosome name of cluster
clustID	cluster identifier
id	clustering parameter identifier

Value

array of feature names

Examples

library(GenomicRanges)

data('decorateData')

# Evaluate hierarchical clustering
treeList = runOrderedClusteringGenome( simData, simLocation ) 

# Choose cutoffs and return clusters
treeListClusters = createClusters( treeList, method='meanClusterSize', meanClusterSize = 50 )

# Find chromsome and cluster of peak_204
getFeaturesInCluster( treeListClusters, "chr20", 3, "50")

GabrielHoffman/decorate documentation built on May 23, 2023, 1:29 a.m.