.Rbuildignore
DESCRIPTION
NAMESPACE
NEWS.md
R/RcppExports.R
R/RcppExports_parents.R
R/boxM.R
R/combineResults.R
R/evaluateCorrDecay.R
R/extractCorrelationScores.R
R/iterators.R
R/local_correlations.R
R/other_corr_tests.R
R/plotCorrPairs.R
R/plotEnsGenes.R
R/plotGenes.R
R/plots.R
R/random_statistics.R
R/run_sled.R
R/sim_data.R
README.md
TODO
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data/decorateData.rda
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inst/CITATION
inst/unitTests/test_boxM.R
inst/unitTests/test_corSubsetPairs.R
man/boxM.Rd
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man/delaneau.score.Rd
man/delaneau.test.Rd
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man/epiclust-class.Rd
man/epiclustDiscreteList-class.Rd
man/epiclustDiscreteListContain-class.Rd
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man/evaluateCorrDecay.Rd
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man/filterClusters.Rd
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man/getSubset-methods.Rd
man/get_exon_coords.Rd
man/ggplot_by_sampling.Rd
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man/makeImageRect.Rd
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man/plotCorrTriangle.Rd
man/plotDecorate.Rd
man/plotDensityPoints.Rd
man/plotEnsGenes.Rd
man/plotGenes.Rd
man/plotPairwiseScatter.Rd
man/plotScatterPairs.Rd
man/retainClusters.Rd
man/runFastStat.Rd
man/runOrderedClustering.Rd
man/runOrderedClusteringGenome.Rd
man/runPermutedData.Rd
man/sLEDresults-class.Rd
man/scoreClusters.Rd
man/sle.score.Rd
man/sle.test.Rd
man/sub-epiclustDiscreteListContain-ANY-ANY-ANY-method.Rd
man/summary-sLEDresults-method.Rd
man/whichCluster.Rd
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/boxM.cpp
src/corSubsetPairs.cpp
tests/runTests.R
vignettes/decorate.Rmd