figure4a: TCGA survival analysis

In GranderLab/miR34a_asRNA_project: The miR34AasRNAproject package facilitates the transparency and reproducibility of the miR34a asRNA project and associated publication.

Description

TCGA survival analysis

Format

A tibble with 22,769 rows and 8 variables:

TCGA_id

Character; TCGA sample ID.

Cancer

Character; Indicates cancer type.

TP53

Numeric; Indicates TP53 nonsynonymous mutation. FALSE is wild type, TRUE is mutated. Mutect2 v7 called data were downloaded from TCGA on 20171030.

lncTAM34a

Numeric; Expression for lncTAM34a. For details on RNA-Seq processing, see Ashouri A et al. Nat Commun. 2016;7

miR34a

Numeric; Expression for miR34a. For details on RNA-Seq processing, see Ashouri A et al. Nat Commun. 2016;7

vitalStatus

Character; Vital state. Data were downloaded from TCGA on 20171027.

FU

Numeric; Date of last follow-up. Data were downloaded from TCGA on 20171027.

...

Examples

getData('Figure 4a')

GranderLab/miR34a_asRNA_project documentation built on May 26, 2019, 7:26 a.m.