supp_figure8: lnc34a CAGE analysis.

In GranderLab/miR34a_asRNA_project: The miR34AasRNAproject package facilitates the transparency and reproducibility of the miR34a asRNA project and associated publication.

Description

All available CAGE data from 36 cell lines was downloaded from UCSC with the script entitled "lnc34a CAGE" in the data-raw/saveRDS.R file. Of these 28 cell lines had CAGE transcription start sites mapping to the plus strand of chromosome 1 and in regions corresponding to 200 bp upstream of the lnc34a start site (9241796 - 200) and 200 bp upstream of the GENCODE annotated miR34a asRNA start site (9242263 + 200). These cell lines included: AG04450, BJ, GM12878, H1-hESC, HAoAF, HAoEC, HCH, HepG2, HFDPC, HMEpC, hMSC-AT, hMSC-BM, hMSC-UC, HOB, HPC-PL, HPIEpC, HSaVEC, HUVEC, HVMF, HWP, IMR90, MCF-7, NHDF, NHEK, NHEM.f_M2, NHEM_M2, SkMC, SK-N-SH_RA.

Format

A tibble with 74 rows and 35 variables:

Source

https://www.encodeproject.org

Examples

getData('Supplementary Figure 8')

GranderLab/miR34a_asRNA_project documentation built on May 26, 2019, 7:26 a.m.