bs_pm: Inferring the network of different group of samples and test...
In Guan06/mina: Microbial community dIversity and Network Analysis

Description Usage Arguments Value Examples

Inferring the network of different group of samples and test significance by permutation.

1	bs_pm(x, group, ...)

`x`	An object of class 'mina' with 'norm' and 'des' defined.
`group`	The column name of descriptive file 'des' for comparison.
`...`	Additional parameters.

The network bootstrap and permutation result.

maize <- new("mina", tab = maize_asv2, des = maize_des2)
maize <- norm_tab(maize, method = "raref")
maize <- fit_tabs(maize)
maize <- get_rep(maize, top = 5)
maize <- bs_pm(maize, group = "Compartment", per = 0.5)