com_r2: Calculate the unexplained variance ratio using formula...

In Guan06/mina: Microbial community dIversity and Network Analysis

Description

Calculate the unexplained variance ratio using formula indicated in: Anderson, M.J. 2001. A new method for non-parametric multivariate analysis of variance. Austral Ecology, 26: 32–46.

Usage

com_r2(x, group)

Arguments

x	An object of class 'mina' with 'dis' and 'des' defined.
group	The name(s) of column(s) defined as experimental setup group(s).

Value

Unexplained variance ratio.

Examples

data(maize)
maize <- norm_tab(maize, method = "raref", depth = 5000)
maize <- fit_tabs(maize)
maize <- com_dis(maize, method = "bray")
com_r2(maize, group = c("Compartment", "Soil", "Host_genotype"))

Guan06/mina documentation built on Feb. 21, 2022, 11:56 a.m.