dmr-mina: Dimensionality reduction of the 'dis' included in mina.

In Guan06/mina: Microbial community dIversity and Network Analysis

Description

Dimensionality reduction of the 'dis' included in mina.

Usage

## S4 method for signature 'mina'
dmr(x, k = 4)

Arguments

x	An object of the class 'mina' with 'dis' defined.
k	The number of dimensionality after reduction, 4 by default.

Value

x The same object with 'dmr' added.

Examples

maize <- new("mina", tab = maize_asv2, des = maize_des2)
maize <- norm_tab(maize, method = "raref")
maize <- fit_tabs(maize)
maize <- com_dis(maize, method = "bray")
maize <- dmr(maize)

Guan06/mina documentation built on Feb. 21, 2022, 11:56 a.m.