get_r2: Same function as 'com_r2' with matrix and corresponding...
In Guan06/mina: Microbial community dIversity and Network Analysis

Description Usage Arguments Value Examples

Same function as 'com_r2' with matrix and corresponding descriptive table as input.

1	get_r2(x, des, group)

`x`	Dissimilarity / distance matrix which indicate variances.
`des`	The descriptive table of samples which define the groups.
`group`	The name(s) of column(s) used as experimental setup group(s) in descriptive file.

r2 The variance ratio cannot be explained by given groups.

maize <- new("mina", tab = maize_asv2, des = maize_des2)
maize <- norm_tab(maize, method = "raref")
maize <- fit_tabs(maize)
maize <- com_dis(maize, method = "bray")
get_r2(dis(maize), des(maize), group = c("Compartment", "Soil"))