get_net_cls_tab: Get the cluster table 'cls_tab' from quantitative table...

Description Usage Arguments Value Examples

Description

Get the cluster table 'cls_tab' from quantitative table 'norm' and network clustering results 'cls'.

Usage

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get_net_cls_tab(x_norm, x_cls, uw = FALSE)

Arguments

x_norm

The normalized quantitative table used for netowrk inference and clustering.

x_cls

The network clustering table.

uw

By summing up the number of present components of each cluster instead of relative abundance, default is FALSE.

Value

x_cls The quantitative table with clusters in rows.

Examples

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maize <- new("mina", tab = maize_asv2, des = maize_des2)
maize <- norm_tab(maize, method = "raref", depth = 1000)
maize <- fit_tabs(maize)
maize_norm <- norm(maize)
maize_adj <- adj(maize_norm, method = "spearman")
maize_cls <- net_cls(maize_adj, method = "ap", cutoff = 0.5)
maize_cls_tab <- get_net_cls_tab(maize_norm, maize_cls)

Guan06/mina documentation built on Feb. 21, 2022, 11:56 a.m.