net_cls: Network clustering of sparsed adjacacency matrix.

In Guan06/mina: Microbial community dIversity and Network Analysis

Description

Network clustering of sparsed adjacacency matrix.

Usage

net_cls(x, method, ...)

Arguments

x	An object of class 'mina' with 'adj' defined.
method	The clustering method used.
...	Additional parameters.

Value

The network clustering results.

Examples

maize <- new("mina", tab = maize_asv2, des = maize_des2)
maize <- norm_tab(maize, method = "raref", depth = 1000)
maize <- fit_tabs(maize)
maize <- adj(maize, method = "spearman")
maize <- net_cls(maize, method = "mcl", cutoff = 0.4, neg = FALSE)

Guan06/mina documentation built on Feb. 21, 2022, 11:56 a.m.