get_rep-matrix: Get the representative community members by extracting the...

In Guan06/mina: Microbial community dIversity and Network Analysis

Description

Get the representative community members by extracting the most abundant and prevalent compositions.

Get the representative community members.

Usage

get_rep(x, ...)

## S4 method for signature 'matrix'
get_rep(x, top = 5)

Arguments

x	A quantitative matrix with samples in columns and compositions in rows.
...	Additional parameters.
top	The percent of the most abundant and prevalent members.

Value

The matrix with samples in columns and representative compositions in rows.

The matrix with samples in columns and representative compositions in rows.

Examples

data(maize_asv)
maize_asv_rep <- get_rep(maize_asv)
data(maize_asv)
maize_asv_rep <- get_rep(maize_asv, top = 5)

Guan06/mina documentation built on Feb. 21, 2022, 11:56 a.m.