com_dis: Calculate the community dissimilarity / distance matrix.
In Guan06/mina: Microbial community dIversity and Network Analysis
Description
Usage
Arguments
Value
Examples
Description
Calculate the community dissimilarity / distance matrix.
Usage
1
Arguments
x
An object of the class mina with 'norm' defined or any quantitative
matrix.
method
The dissimilarity / distance method used, default 'bray'.
...
Additional parameters.
Value
The distance / dissimilarity matrix.
Examples
1
2
asv_norm <- norm_tab(maize_asv2, method = "raref", depth = 1000)
asv_dis <- com_dis(asv_norm, method = "bray")
Guan06/mina documentation built on Feb. 21, 2022, 11:56 a.m.
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Description Usage Arguments Value Examples
Description
Calculate the community dissimilarity / distance matrix.
Usage
1 |
Arguments
x |
An object of the class mina with 'norm' defined or any quantitative matrix. |
method |
The dissimilarity / distance method used, default 'bray'. |
... |
Additional parameters. |
Value
The distance / dissimilarity matrix.
Examples
1 2 | asv_norm <- norm_tab(maize_asv2, method = "raref", depth = 1000)
asv_dis <- com_dis(asv_norm, method = "bray")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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