com_dis_list: List of dissimilarity / distance supported in 'com_dis'....
In Guan06/mina: Microbial community dIversity and Network Analysis
Description
Usage
Format
Examples
Description
List of dissimilarity / distance supported in com_dis.
Dissimilarity / distance should be specified by exact string match.
Usage
1
Format
A list of character vectors indicate the dissimilarity / distance
method used.
tina TINA from Schmidt_et_al_2016
Jaccard Jaccard defined by vegdist
- weighted
Dissimilarity / distance method for weighted matrix:
bhjattacharyya from parDist
canberra from parDist
bray from parDist
chord from parDist
divergence from parDist
euclidean from parDist
fJaccard from parDist
geodesic from parDist
hellinger from parDist
kullback from parDist
manhattan from parDist
maximum from parDist
minkowski from parDist
podani from parDist
soergel from parDist
wave from parDist
whittaker from parDist
- unweighted
Dissimilarity / Distance for unweighted matrix:
binary from parDist
braun-blanquet from parDist
consine from parDist
dice from parDist
fager from parDist
faith from parDist
hamman from parDist
hamming from parDist
kulczynski1 from parDist
kulczynski2 from parDist
michael from parDist
mountford from parDist
mozley from parDist
ochiai from parDist
phi from parDist
russel from parDist
simple matching from parDist
simpson from parDist
stiles from parDist
tanimoto from parDist
yule from parDist
yule2 from parDist
Examples
1
Guan06/mina documentation built on Feb. 21, 2022, 11:56 a.m.
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Description Usage Format Examples
Description
List of dissimilarity / distance supported in com_dis.
Dissimilarity / distance should be specified by exact string match.
Usage
1 |
Format
A list of character vectors indicate the dissimilarity / distance method used.
tinaTINA from Schmidt_et_al_2016
JaccardJaccard defined by
vegdist- weighted
Dissimilarity / distance method for weighted matrix:
bhjattacharyyafrom
parDistcanberrafrom
parDistbrayfrom
parDistchordfrom
parDistdivergencefrom
parDisteuclideanfrom
parDistfJaccardfrom
parDistgeodesicfrom
parDisthellingerfrom
parDistkullbackfrom
parDistmanhattanfrom
parDistmaximumfrom
parDistminkowskifrom
parDistpodanifrom
parDistsoergelfrom
parDistwavefrom
parDistwhittakerfrom
parDist- unweighted
Dissimilarity / Distance for unweighted matrix:
binaryfrom
parDistbraun-blanquetfrom
parDistconsinefrom
parDistdicefrom
parDistfagerfrom
parDistfaithfrom
parDisthammanfrom
parDisthammingfrom
parDistkulczynski1from
parDistkulczynski2from
parDistmichaelfrom
parDistmountfordfrom
parDistmozleyfrom
parDistochiaifrom
parDistphifrom
parDistrusselfrom
parDistsimple matchingfrom
parDistsimpsonfrom
parDiststilesfrom
parDisttanimotofrom
parDistyulefrom
parDistyule2from
parDist
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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