calcNormFactors: Cumulative sum scaling (css) normalization factors
In HCBravoLab/metagenomeSeq: Statistical analysis for sparse high-throughput sequencing
calcNormFactors R Documentation
Cumulative sum scaling (css) normalization factors
Description
Return a vector of the the sum up to and including a quantile.
Usage
calcNormFactors(obj, p = cumNormStatFast(obj))
Arguments
obj
An MRexperiment object or matrix.
p
The pth quantile.
Value
Vector of the sum up to and including a sample's pth quantile.
See Also
fitZig cumNormStatFast cumNorm
Examples
data(mouseData)
head(calcNormFactors(mouseData))
HCBravoLab/metagenomeSeq documentation built on Dec. 20, 2024, 4:06 p.m.
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| calcNormFactors | R Documentation |
Cumulative sum scaling (css) normalization factors
Description
Return a vector of the the sum up to and including a quantile.
Usage
calcNormFactors(obj, p = cumNormStatFast(obj))
Arguments
obj |
An MRexperiment object or matrix. |
p |
The pth quantile. |
Value
Vector of the sum up to and including a sample's pth quantile.
See Also
fitZig cumNormStatFast cumNorm
Examples
data(mouseData)
head(calcNormFactors(mouseData))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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