loadPhenoData: Load a clinical/phenotypic dataset associated with a study.

In HCBravoLab/metagenomeSeq: Statistical analysis for sparse high-throughput sequencing

Load a clinical/phenotypic dataset associated with a study.

Description

Load a matrix of metadata associated with a study.

Usage

loadPhenoData(file, tran = TRUE, sep = "\t")

Arguments

file	Path and filename of the actual clinical file.
tran	Boolean. If the covariates are along the columns and samples along the rows, then tran should equal TRUE.
sep	The separator for the file.

Value

The metadata as a dataframe.

See Also

loadMeta

Examples

dataDirectory <- system.file("extdata", package="metagenomeSeq")
clin = loadPhenoData(file.path(dataDirectory,"CHK_clinical.csv"),tran=TRUE)

HCBravoLab/metagenomeSeq documentation built on Dec. 20, 2024, 4:06 p.m.