calcShrinkParameters: Calculate shrinkage parameters
In HCBravoLab/metagenomeSeq: Statistical analysis for sparse high-throughput sequencing
View source: R/fitZeroLogNormal.R
calcShrinkParameters R Documentation
Calculate shrinkage parameters
Description
Calculate the shrunken variances and variance of parameters of interest across features.
Usage
calcShrinkParameters(fit, coef, mins2, exclude = NULL)
Arguments
fit
A matrix of fits as outputted by calcZeroComponent or calcPosComponent
coef
Coefficient of interest
mins2
minimum variance estimate
exclude
Vector of features to exclude when shrinking
See Also
fitZeroLogNormal fitFeatureModel
HCBravoLab/metagenomeSeq documentation built on Dec. 20, 2024, 4:06 p.m.
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View source: R/fitZeroLogNormal.R
| calcShrinkParameters | R Documentation |
Calculate shrinkage parameters
Description
Calculate the shrunken variances and variance of parameters of interest across features.
Usage
calcShrinkParameters(fit, coef, mins2, exclude = NULL)
Arguments
fit |
A matrix of fits as outputted by calcZeroComponent or calcPosComponent |
coef |
Coefficient of interest |
mins2 |
minimum variance estimate |
exclude |
Vector of features to exclude when shrinking |
See Also
fitZeroLogNormal fitFeatureModel
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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