exportMat: Export the normalized MRexperiment dataset as a matrix.

Description Usage Arguments Value See Also Examples

View source: R/exportMat.R

Description

This function allows the user to take a dataset of counts and output the dataset to the user's workspace as a tab-delimited file, etc.

Usage

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exportMat(obj, log = TRUE, norm = TRUE, sep = "\t",
  file = "~/Desktop/matrix.tsv")

Arguments

obj

A MRexperiment object or count matrix.

log

Whether or not to log transform the counts - if MRexperiment object.

norm

Whether or not to normalize the counts - if MRexperiment object.

sep

Separator for writing out the count matrix.

file

Output file name.

Value

NA

See Also

cumNorm

Examples

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data(lungData)
dataDirectory <- system.file("extdata", package="metagenomeSeq")
exportMat(lungData[,1:5],file=file.path(dataDirectory,"tmp.tsv"))
head(read.csv(file=file.path(dataDirectory,"tmp.tsv"),sep="\t"))

HCBravoLab/metagenomeSeq documentation built on Nov. 6, 2019, 10:50 a.m.