extractMR: Extract the essentials of an MRexperiment.
In HCBravoLab/metagenomeSeq: Statistical analysis for sparse high-throughput sequencing
View source: R/mergeMRexperiments.R
extractMR R Documentation
Extract the essentials of an MRexperiment.
Description
Extract the essentials of an MRexperiment.
Usage
extractMR(obj)
Arguments
obj
MRexperiment-class object.
Value
A list containing:
counts : Count data
librarySize : The column sums / library size / sequencing depth
normFactors : The normalization scaling factors
pheno : phenotype table
feat : feature table
Examples
data(mouseData)
head(metagenomeSeq:::extractMR(mouseData))
HCBravoLab/metagenomeSeq documentation built on Dec. 20, 2024, 4:06 p.m.
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View source: R/mergeMRexperiments.R
| extractMR | R Documentation |
Extract the essentials of an MRexperiment.
Description
Extract the essentials of an MRexperiment.
Usage
extractMR(obj)
Arguments
obj |
MRexperiment-class object. |
Value
A list containing:
counts : Count data
librarySize : The column sums / library size / sequencing depth
normFactors : The normalization scaling factors
pheno : phenotype table
feat : feature table
Examples
data(mouseData)
head(metagenomeSeq:::extractMR(mouseData))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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