fitZigResults-class: Class "fitZigResults" - a formal class for storing results...

fitZigResults-classR Documentation

Class "fitZigResults" – a formal class for storing results from a fitZig call

Description

This class contains all of the same information expected from a fitZig call, but it is defined in the S4 style as opposed to being stored as a list.

Slots

call

the call made to fitZig

fit

'MLArrayLM' Limma object of the weighted fit

countResiduals

standardized residuals of the fit

z

matrix of the posterior probabilities. It is defined as $z_ij = pr(delta_ij=1 | data)$

zUsed

used in getZ

eb

output of eBayes, moderated t-statistics, moderated F-statistics, etc

taxa

vector of the taxa names

counts

the original count matrix input

zeroMod

the zero model matrix

zeroCoef

the zero model fitted results

stillActive

convergence

stillActiveNLL

nll at convergence

dupcor

correlation of duplicates


HCBravoLab/metagenomeSeq documentation built on March 17, 2024, 3:21 p.m.