calcZeroAdjustment: Calculate the zero-inflated component's adjustment factor

In HCBravoLab/metagenomeSeq: Statistical analysis for sparse high-throughput sequencing

Calculate the zero-inflated component's adjustment factor

Description

Calculate the log ratio of average marginal probabilities for each sample having a positive count. This becomes the adjustment factor for the log fold change.

Usage

calcZeroAdjustment(fitln, fitzero, mod, coef, exclude = NULL)

Arguments

fitln	A matrix with parameters from the log-normal fit
fitzero	A matrix with parameters from the logistic fit
mod	The zero component model matrix
coef	Coefficient of interest
exclude	List of features to exclude

See Also

fitZeroLogNormal fitFeatureModel

HCBravoLab/metagenomeSeq documentation built on March 17, 2024, 3:21 p.m.