API for HCBravoLab/metagenomeSeq
Statistical analysis for sparse high-throughput sequencing

Global functions
MRcoefs Man page Source code
MRcounts Man page Source code
MRcounts,MRexperiment-method Man page
MRexperiment-class Man page
MRexperiment2biom Man page Source code
MRfulltable Man page Source code
MRtable Man page Source code
[,MRexperiment,ANY,ANY,ANY-method Man page
[,MRexperiment-method Man page
aggSamp Man page Man page Source code
aggTax Man page Man page Source code
aggregateBySample Man page Source code
aggregateByTaxonomy Man page Source code
biom2MRexperiment Man page Source code
calcNormFactors Man page Source code
calcPosComponent Man page Source code
calcShrinkParameters Man page Source code
calcStandardError Man page Source code
calcZeroAdjustment Man page Source code
calcZeroComponent Man page Source code
calculateEffectiveSamples Man page Source code
colMeans,MRexperiment-method Man page
colSums,MRexperiment-method Man page
corTest Man page
correctIndices Man page Source code
correlationTest Man page Source code
cumNorm Man page Source code
cumNormMat Man page Source code
cumNormStat Man page Source code
cumNormStatFast Man page Source code
deprecated_metagenomeSeq_function Man page Source code
doCountMStep Man page Source code
doEStep Man page Source code
doZeroMStep Man page Source code
do_fitZig Source code
expSummary Man page Source code
expSummary,MRexperiment-method Man page
exportMat Man page Source code
exportMatrix Man page
exportStats Man page Source code
extractMR Man page Source code
filterData Man page Source code
fitDO Man page Source code
fitFeatureModel Man page Source code
fitLogNormal Man page Source code
fitMeta Man page Source code
fitMultipleTimeSeries Man page Source code
fitPA Man page Source code
fitSSTimeSeries Man page Source code
fitTimeSeries Man page Source code
fitZeroLogNormal Man page Source code
fitZig Man page Source code
genusPlot Man page
getCountDensity Man page Source code
getEpsilon Man page Source code
getNegativeLogLikelihoods Man page Source code
getPi Man page Source code
getZ Man page Source code
isItStillActive Man page Source code
libSize Man page
libSize,MRexperiment-method Man page
libSize<- Man page
libSize<-,MRexperiment,numeric-method Man page
loadBiom Man page Source code
loadMeta Man page Source code
loadMetaQ Man page Source code
loadPhenoData Man page Source code
load_biom Man page Source code
load_meta Man page Source code
load_metaQ Man page Source code
load_phenoData Man page Source code
lungData Man page
makeLabels Man page Source code
mergeMRexperiments Man page Source code
mergeTable Man page Source code
metadata Source code
metagenomeSeq Man page
metagenomeSeq-deprecated Man page
metagenomeSeq-deprecated-package Man page
metagenomeSeq-package Man page
metagenomicLoader Man page
mouseData Man page
newMRexperiment Man page Source code
normFactors Man page
normFactors,MRexperiment-method Man page
normFactors<- Man page
normFactors<-,MRexperiment,numeric-method Man page
phenoData Man page
plotBubble Man page Source code
plotClassTimeSeries Man page Source code
plotCorr Man page Source code
plotFeature Man page Source code
plotGenus Man page Source code
plotMRheatmap Man page Source code
plotOTU Man page Source code
plotOrd Man page Source code
plotRare Man page Source code
plotTimeSeries Man page Source code
posteriorProbs Man page Source code
posteriorProbs,MRexperiment-method Man page
qiimeLoader Man page
returnAppropriateObj Man page Source code
rowMeans,MRexperiment-method Man page
rowSums,MRexperiment-method Man page
settings2 Man page
ssFit Man page Source code
ssIntervalCandidate Man page Source code
ssPerm Man page Source code
ssPermAnalysis Man page Source code
trapz Man page Source code
ts2MRexperiment Man page Source code
uniqueFeatures Man page Source code
zigControl Man page Source code
HCBravoLab/metagenomeSeq documentation built on Dec. 12, 2017, 1:11 p.m.