MRexperiment2biom: MRexperiment to biom objects

In HCBravoLab/metagenomeSeq: Statistical analysis for sparse high-throughput sequencing

MRexperiment to biom objects

Description

Wrapper to convert MRexperiment objects to biom objects.

Usage

MRexperiment2biom(
  obj,
  id = NULL,
  norm = FALSE,
  log = FALSE,
  sl = 1000,
  qiimeVersion = TRUE
)

Arguments

obj	The MRexperiment object.
id	Optional id for the biom matrix.
norm	normalize count table
log	log2 transform count table
sl	scaling factor for normalized counts.
qiimeVersion	Format fData according to QIIME specifications (assumes only taxonomy in fData).

Value

A biom object.

See Also

loadMeta loadPhenoData newMRexperiment loadBiom biom2MRexperiment

HCBravoLab/metagenomeSeq documentation built on Dec. 20, 2024, 4:06 p.m.