plotTimeSeries: Plot difference function for particular bacteria

In HCBravoLab/metagenomeSeq: Statistical analysis for sparse high-throughput sequencing

Plot difference function for particular bacteria

Description

Plot the difference in abundance for significant features.

Usage

plotTimeSeries(
  res,
  C = 0,
  xlab = "Time",
  ylab = "Difference in abundance",
  main = "SS difference function prediction",
  ...
)

Arguments

res	Output of fitTimeSeries function
C	Value for which difference function has to be larger or smaller than (default 0).
xlab	X-label.
ylab	Y-label.
main	Main label.
...	Extra plotting arguments.

Value

Plot of difference in abundance for significant features.

See Also

fitTimeSeries

Examples

data(mouseData)
res = fitTimeSeries(obj=mouseData,feature="Actinobacteria",
   class="status",id="mouseID",time="relativeTime",lvl='class',B=10)
plotTimeSeries(res)

HCBravoLab/metagenomeSeq documentation built on March 17, 2024, 3:21 p.m.