zigControl: Settings for the fitZig function

In HCBravoLab/metagenomeSeq: Statistical analysis for sparse high-throughput sequencing

Settings for the fitZig function

Description

Settings for the fitZig function

Usage

zigControl(
  tol = 1e-04,
  maxit = 10,
  verbose = TRUE,
  dfMethod = "modified",
  pvalMethod = "default"
)

Arguments

tol	The tolerance for the difference in negative log likelihood estimates for a feature to remain active.
maxit	The maximum number of iterations for the expectation-maximization algorithm.
verbose	Whether to display iterative step summary statistics or not.
dfMethod	Either 'default' or 'modified' (by responsibilities).
pvalMethod	Either 'default' or 'bootstrap'.

Value

The value for the tolerance, maximum no. of iterations, and the verbose warning.

Note

fitZig makes use of zigControl.

See Also

fitZig cumNorm plotOTU

Examples

control =  zigControl(tol=1e-10,maxit=10,verbose=FALSE)

HCBravoLab/metagenomeSeq documentation built on March 17, 2024, 3:21 p.m.