AlleleFreq: Compute allele frequencies per cell

In Honchkrow/SignacSlim: The slim version of signac

Compute allele frequencies per cell

Description

Collapses allele counts for each strand and normalize by the total number of counts at each nucleotide position.

Usage

AlleleFreq(object, ...)

Arguments

object	A Seurat object, Assay, or matrix
...	Arguments passed to other methods

Value

Returns a Seurat object with a new assay containing the allele frequencies for the informative variants.

Examples

print("see https://satijalab.org/signac/reference/allelefreq")

Honchkrow/SignacSlim documentation built on April 9, 2022, 1:49 a.m.