GetCellsInRegion: Get cells in a region
In Honchkrow/SignacSlim: The slim version of signac
GetCellsInRegion R Documentation
Get cells in a region
Description
Extract cell names containing reads mapped within a given genomic region
Usage
GetCellsInRegion(tabix, region, cells = NULL)
Arguments
tabix
Tabix object
region
A string giving the region to extract from the fragments file
cells
Vector of cells to include in output. If NULL, include all cells
Value
Returns a list
Examples
fpath <- system.file("extdata", "fragments.tsv.gz", package="SignacSlim")
GetCellsInRegion(tabix = fpath, region = "chr1-10245-762629")
Honchkrow/SignacSlim documentation built on April 9, 2022, 1:49 a.m.
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| GetCellsInRegion | R Documentation |
Get cells in a region
Description
Extract cell names containing reads mapped within a given genomic region
Usage
GetCellsInRegion(tabix, region, cells = NULL)
Arguments
tabix |
Tabix object |
region |
A string giving the region to extract from the fragments file |
cells |
Vector of cells to include in output. If NULL, include all cells |
Value
Returns a list
Examples
fpath <- system.file("extdata", "fragments.tsv.gz", package="SignacSlim")
GetCellsInRegion(tabix = fpath, region = "chr1-10245-762629")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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