coverage-ChromatinAssay-method: Coverage of a ChromatinAssay object

In Honchkrow/SignacSlim: The slim version of signac

Coverage of a ChromatinAssay object

Description

This is the coverage method for ChromatinAssay objects.

Usage

## S4 method for signature 'ChromatinAssay'
coverage(
  x,
  shift = 0L,
  width = NULL,
  weight = 1L,
  method = c("auto", "sort", "hash")
)

Arguments

x	A ChromatinAssay object
shift	How much each range should be shifted before coverage is computed. See coverage in the IRanges package.
width	Specifies the length of the returned coverage vectors. See coverage in the IRanges package.
weight	Assigns weight to each range in x. See coverage in the IRanges package.
method	See coverage in the IRanges package

Value

Genome Coverage

Functions

• coverage,ChromatinAssay-method: method for ChromatinAssay objects

See Also

• coverage-methods in the IRanges package.

• coverage-methods in the GenomicRanges package

• ChromatinAssay-class

Examples

print("see https://satijalab.org/signac/reference/chromatinassay-class")

Honchkrow/SignacSlim documentation built on April 9, 2022, 1:49 a.m.