CreateRegionPileupMatrix: Create cut site pileup matrix

In Honchkrow/SignacSlim: The slim version of signac

Create cut site pileup matrix

Description

For a set of aligned genomic ranges, find the total number of integration sites per cell per base.

Usage

CreateRegionPileupMatrix(
  object,
  regions,
  assay = NULL,
  cells = NULL,
  verbose = TRUE
)

Arguments

object	A Seurat object
regions	A GRanges object
assay	Name of the assay to use
cells	Which cells to include. If NULL, use all cells
verbose	Display messages

Value

cut site pileup matrix

Honchkrow/SignacSlim documentation built on April 9, 2022, 1:49 a.m.