granges-methods: Access genomic ranges for ChromatinAssay objects

In Honchkrow/SignacSlim: The slim version of signac

Access genomic ranges for ChromatinAssay objects

Description

Methods for accessing GRanges object information stored in a ChromatinAssay object.

Usage

## S4 method for signature 'ChromatinAssay'
granges(x, use.names = TRUE, use.mcols = FALSE, ...)

Arguments

x	A ChromatinAssay object
use.names	Whether the names on the genomic ranges should be propagated to the returned object.
use.mcols	Not supported for ChromatinAssay objects
...	Additional arguments

Value

Returns a GRanges object

See Also

• granges in the GenomicRanges package.

• ChromatinAssay-class

Examples

ppath <- system.file("extdata", "peaks.rds", package="SignacSlim")
peaks <- readRDS(ppath)

Honchkrow/SignacSlim documentation built on April 9, 2022, 1:49 a.m.