GetTSSPositions: Find transcriptional start sites
In Honchkrow/SignacSlim: The slim version of signac
GetTSSPositions R Documentation
Find transcriptional start sites
Description
Get the TSS positions from a set of genomic ranges containing gene positions.
Ranges can contain exons, introns, UTRs, etc, rather than the whole
transcript. Only protein coding gene biotypes are included in output.
Usage
GetTSSPositions(ranges, biotypes = "protein_coding")
Arguments
ranges
A GRanges object containing gene annotations.
biotypes
Gene biotypes to include. If NULL, use all biotypes in the
supplied gene annotation.
Value
transcriptional start sites
Examples
print("see https://satijalab.org/signac/reference/gettsspositions")
Honchkrow/SignacSlim documentation built on April 9, 2022, 1:49 a.m.
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| GetTSSPositions | R Documentation |
Find transcriptional start sites
Description
Get the TSS positions from a set of genomic ranges containing gene positions. Ranges can contain exons, introns, UTRs, etc, rather than the whole transcript. Only protein coding gene biotypes are included in output.
Usage
GetTSSPositions(ranges, biotypes = "protein_coding")
Arguments
ranges |
A GRanges object containing gene annotations. |
biotypes |
Gene biotypes to include. If NULL, use all biotypes in the supplied gene annotation. |
Value
transcriptional start sites
Examples
print("see https://satijalab.org/signac/reference/gettsspositions")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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