In J0bbie/R2CPCT: Misc. functions to perform import and analysis of WGS and RNA-Seq samples
Download compiled jar of LINX
Download the latest LINX version from: https://github.com/hartwigmedical/hmftools/releases/download/
Download ENSEMBL annotations.
java -cp linx_v1.16.jar com.hartwig.hmftools.linx.gene.GenerateEnsemblDataCache -ensembl_db "mysql://ensembldb.ensembl.org:3337/homo_sapiens_core_101_37" -ensembl_user "anonymous" -ensembl_pass "" -output_dir /mnt/onco0002/repository/software/LINX_v1.16/ENSEMBLv101/
Download LINE elements, known fusions and fragile site from HMF.
J0bbie/R2CPCT documentation built on Feb. 24, 2022, 8:15 a.m.
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Download compiled jar of LINX
Download the latest LINX version from: https://github.com/hartwigmedical/hmftools/releases/download/
Download ENSEMBL annotations.
java -cp linx_v1.16.jar com.hartwig.hmftools.linx.gene.GenerateEnsemblDataCache -ensembl_db "mysql://ensembldb.ensembl.org:3337/homo_sapiens_core_101_37" -ensembl_user "anonymous" -ensembl_pass "" -output_dir /mnt/onco0002/repository/software/LINX_v1.16/ENSEMBLv101/
Download LINE elements, known fusions and fragile site from HMF.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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