getBnn: Nearest background neighbor
In JEFworks/MERingue: Characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with non-uniform cellular densities
View source: R/nearestNeighbor.R
getBnn R Documentation
Nearest background neighbor
Description
Identify nearest neighbors in the background cell-type
Usage
getBnn(cct, nct, pos, k)
Arguments
cct
Vector of cell names from cell type of interest
nct
Vector of cell names from background
pos
Position
k
Number of nearest neighbors from background for each cell from cell type of interest
Value
Boolean matrix where value = 1 if two cells are considered adjacency ie. neighbors, else 0
JEFworks/MERingue documentation built on June 11, 2022, 4:16 a.m.
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View source: R/nearestNeighbor.R
| getBnn | R Documentation |
Nearest background neighbor
Description
Identify nearest neighbors in the background cell-type
Usage
getBnn(cct, nct, pos, k)
Arguments
cct |
Vector of cell names from cell type of interest |
nct |
Vector of cell names from background |
pos |
Position |
k |
Number of nearest neighbors from background for each cell from cell type of interest |
Value
Boolean matrix where value = 1 if two cells are considered adjacency ie. neighbors, else 0
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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