receptorLigandInfo: Receptor ligand list

In JEFworks/MERingue: Characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with non-uniform cellular densities

Receptor ligand list

Description

Receptor ligand list

Usage

receptorLigandInfo

Format

Data frame corresponding to ncomms8866-s3.xlsx in Ramilowski et al (Nature Communications 2015)

Source

https://www.nature.com/articles/ncomms8866

Examples

data(receptorLigandInfo)
receptors <- unique(receptorLigandInfo$Receptor.ApprovedSymbol)
receptorLigandList <- lapply(receptors, function(rp) {
     vi <- receptorLigandInfo$Receptor.ApprovedSymbol == rp
     return(receptorLigandInfo[vi,]$Ligand.ApprovedSymbol)
})
names(receptorLigandList) <- receptors
ligands <- unique(receptorLigandInfo$Ligand.ApprovedSymbol)
ligandReceptorList <- lapply(ligands, function(rp) {
     vi <- receptorLigandInfo$Ligand.ApprovedSymbol == rp
     return(receptorLigandInfo[vi,]$Receptor.ApprovedSymbol)
})
names(ligandReceptorList) <- ligands

JEFworks/MERingue documentation built on June 11, 2022, 4:16 a.m.