mouseCoronal: Visium 10X Spatial Transcriptomics data of an adult mouse...
In JEFworks/MERingue: Characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with non-uniform cellular densities
mouseCoronal R Documentation
Visium 10X Spatial Transcriptomics data of an adult mouse brain coronal section (P56)
Description
Visium 10X Spatial Transcriptomics data of an adult mouse brain coronal section (P56)
Usage
mouseCoronal
Format
List where 'filteredGenes' is a sparse matrix with columns as genes and rows as spot IDs
where expression values have already been normalized and genes filtered
to 1263 genes whose expression variance across the 2702 spots is higher
than transcriptome-wide expectations. mt genes also removed.
'tissueSpotRotation' is a data frame of x, y position values per spot
where the spot barcodes are the 2702 that overlap the tissue.
Coordinated have been adjusted to match the high resolution PNG image
and rotated such that they visually match the tissue image when plotted.
'cluster6CorrMtx' is the cross correlation matrix of the significantly spatially
variable expressed genes in cluster 6.
Source
https://cf.10xgenomics.com/samples/spatial-exp/1.1.0/V1_Adult_Mouse_Brain/
JEFworks/MERingue documentation built on June 11, 2022, 4:16 a.m.
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| mouseCoronal | R Documentation |
Visium 10X Spatial Transcriptomics data of an adult mouse brain coronal section (P56)
Description
Visium 10X Spatial Transcriptomics data of an adult mouse brain coronal section (P56)
Usage
mouseCoronal
Format
List where 'filteredGenes' is a sparse matrix with columns as genes and rows as spot IDs where expression values have already been normalized and genes filtered to 1263 genes whose expression variance across the 2702 spots is higher than transcriptome-wide expectations. mt genes also removed. 'tissueSpotRotation' is a data frame of x, y position values per spot where the spot barcodes are the 2702 that overlap the tissue. Coordinated have been adjusted to match the high resolution PNG image and rotated such that they visually match the tissue image when plotted. 'cluster6CorrMtx' is the cross correlation matrix of the significantly spatially variable expressed genes in cluster 6.
Source
https://cf.10xgenomics.com/samples/spatial-exp/1.1.0/V1_Adult_Mouse_Brain/
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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