plotNetwork3D: Plot an adjacency weight matrix as a network in 3D

In JEFworks/MERingue: Characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with non-uniform cellular densities

Plot an adjacency weight matrix as a network in 3D

Description

Plot an adjacency weight matrix as a network in 3D

Usage

plotNetwork3D(
  pos,
  adj,
  col = "black",
  line.col = "grey",
  alpha = 0.5,
  line.power = 1,
  ...
)

Arguments

pos	3D position information
adj	Adjacency weight matrix
col	Color of points
line.col	Color of line
alpha	Line color transparency
line.power	Thickness of lines
...	Additional plotting parameters

Value

None

Examples

## Not run: 
data(drosophila)
pos <- drosophila$pos
N <- getSpatialNeighbors(pos, filterDist = 10, verbose=TRUE)
plotNetwork3D(pos, N, size=1)

## End(Not run)

JEFworks/MERingue documentation built on June 11, 2022, 4:16 a.m.