makeApp | R Documentation |
Make a shiny app to interactively explore data
makeApp( pos, gexp, results, title, description = NULL, pal = colorRampPalette(c("blue", "grey", "red"))(100), scale = TRUE, zlim = c(-1.5, 1.5), ... )
pos |
Position |
gexp |
Gene expression |
results |
Dataframe of analysis results |
title |
Page title |
description |
Page description |
pal |
Color ramp palette |
scale |
Boolean of whether to scale and center expression values |
zlim |
Color range |
... |
Additional plotting parameters |
Shiny app
data(mOB) pos <- mOB$pos gexp <- as.matrix(normalizeCounts(mOB$counts, log=FALSE)) results <- mOB$results results[, 1:3] <- round(results[, 1:3], digits=3) makeApp(pos, gexp, results, title='mOB', description='Mouse Olfactory Bulb Spatial Transcriptomics Data')
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