clusterrnaCrosslink: clusterrnaCrosslink
In JLP-BioInf/comradesOO: Analysis of RNA Crosslinking Data

clusterrnaCrosslink

R Documentation

clusterrnaCrosslink

Description

This method clusters the duplexes.

Usage

clusterrnaCrosslink(cds, cores = 3, stepCount = 2, clusterCutoff = 20)

Arguments

`cds`	rnaCrosslinkDataSet object created with rnaCrosslinkDataSet
`cores`	numeric - The number of cores to use
`stepCount`	Stringency for clustering
`clusterCutoff`	The minimum number of reads a cluster requires

Value

A rnaCrosslinkDataSet object

Examples

cds = makeExamplernaCrosslinkDataSet()

clusterrnaCrosslink(cds,
                cores = 1,
                stepCount = 1,
                clusterCutoff = 0)

JLP-BioInf/comradesOO documentation built on April 28, 2024, 4:22 a.m.