plotClusterAgreement: Plot a heatmap that plots the agreements between replicates...

In JLP-BioInf/comradesOO: Analysis of RNA Crosslinking Data

Plot a heatmap that plots the agreements between replicates after clusterrnaCrosslink has been performed

Description

Plot a heatmap that plots the agreements between replicates after clusterrnaCrosslink has been performed

Usage

plotClusterAgreement(cds, analysisStage = "originalClusters")

Arguments

cds	A rnaCrosslinkDataSet object
analysisStage	The stage of the analysis to plot

Value

A heatmap of the agreement between replicates in the analysis stage chosen

Examples

cds = makeExamplernaCrosslinkDataSet()


clusteredCds = clusterrnaCrosslink(cds,
                cores = 1,
                stepCount = 1,
                clusterCutoff = 0)


plotClusterAgreement(cds)

JLP-BioInf/comradesOO documentation built on April 28, 2024, 4:22 a.m.