printClustersFast: printClustersFast

In JLP-BioInf/comradesOO: Analysis of RNA Crosslinking Data

printClustersFast

Description

Makes a table with the coordinates of the clusters

Usage

printClustersFast(dir, clustering, highest_clusters, left, right)

Arguments

dir	the directory that contains the *Inputrids.Input files
clustering	The output from the iGraph function cluster_walktrap for the (made with adjacency matrix input)
highest_clusters	The cluster you are interested in keeping
left	list created with InputToGRanges (but just the left section of the list)
right	list created with InputToGRanges (but just the right section of the list)

Details

Does the same as printClusters but is a lot faster and does not create plots of each cluster

Value

A table of clusters and coordinates

JLP-BioInf/comradesOO documentation built on April 28, 2024, 4:22 a.m.