readNumbers | R Documentation |
This method prints a table showing the number of duplexes in the clusters in each step of the analysis
readNumbers(knowClusteredCds, rna)
knowClusteredCds |
A rnaCrosslinkDataSet object after clustering has been performed |
rna |
The RNA ID of interest - use rna(cdsObject). |
A data.frame shoing the number of reads in clusters for each sample
cds = makeExamplernaCrosslinkDataSet()
clusteredCds = clusterrnaCrosslink(cds,
cores = 1,
stepCount = 1,
clusterCutoff = 1)
readNumbers(clusteredCds)
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