findBasePairsRNAcoFold2: findBasePairsRNAcoFold2

In JLP-BioInf/comradesOO: Analysis of RNA Crosslinking Data

findBasePairsRNAcoFold2

Description

Folds the clusters using Vienna RNAfold

Usage

findBasePairsRNAcoFold2(
  startPos1,
  endPos1,
  seq1,
  startPos2,
  endPos2,
  seq2,
  fasta,
  shape
)

Arguments

startPos1	Start of the cluster side x
endPos1	End of the cluster side x
seq1	Sequence of x
startPos2	Start of the cluster side y
endPos2	End of the cluster side y
seq2	Sequence of y
fasta	rnaRefs
shape	shape reactivities

Value

A table of clusters and coordinates with folds

JLP-BioInf/comradesOO documentation built on Jan. 26, 2025, 6:35 a.m.