plotMatricesAverage | R Documentation |
Plots a contact map of all samples for two chosen stages in the analysis, with each chosen stage on separate halves of the contact map
plotMatricesAverage(
cds,
type1 = "original",
type2 = "blank",
directory = 0,
a = 1,
b = 50,
c = 1,
d = 50,
h = 3
)
cds |
A rnaCrosslinkDataSet object |
type1 |
The analysis stage to plot on the upper half of the heatmap (use 'blank' to leave this half blank) |
type2 |
The analysis stage to plot on the lower half of the heatmap (use 'blank' to leave this half blank) |
directory |
An output directory for the heatmap (use 0 for no output) |
a |
To make a subsetted plot (left value on x) |
b |
To make a subsetted plot (right value on x) |
c |
To make a subsetted plot (left value on y) |
d |
To make a subsetted plot (right value on y) |
h |
Height of image (inches) ( only useful if plotting) |
A heatmap of the reads in the two analysis stages chosen, with each chosen stage on a separate half of the heatmap
cds = makeExamplernaCrosslinkDataSet()
plotMatricesAverage(cds,
b = rnaSize(cds),
d = rnaSize(cds))
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.