getAdjacancyMat: getAdjacancyMat

View source: R/commonHelpersAndMethods.R

getAdjacancyMatR Documentation

getAdjacancyMat

Description

Makes and adjacency matrix list (for clustering)

Usage

getAdjacancyMat(InputGranges, nucletideOrPerc, cutoff)

Arguments

InputGranges

list created with InputToGRanges (but just the gap section of the list)

nucletideOrPerc

measure difference by percentage or nucleotides

cutoff

The maximum difference before giving these two gaps 0

Details

Makes and adjacency matrix list (for clustering)

Value

A list of Adjacancy matrices


JLP-BioInf/comradesOO documentation built on Aug. 11, 2024, 4:23 a.m.