plotMatrices: Plots a number of contact maps to file of each sample for a...

In JLP-BioInf/comradesOO: Analysis of RNA Crosslinking Data

Plots a number of contact maps to file of each sample for a stage in the analysis

Description

Plots a number of contact maps to file of each sample for a stage in the analysis

Usage

plotMatrices(
  cds,
  type = "original",
  directory = 0,
  a = 1,
  b = 50,
  c = 1,
  d = 50,
  h = 3
)

Arguments

cds	A rnaCrosslinkDataSet object
type	The analysis stage to plot
directory	An output directory for the heatmap (use 0 for no output)
a	To make a subsetted plot (left value on x)
b	To make a subsetted plot (right value on x)
c	To make a subsetted plot (left value on y)
d	To make a subsetted plot (right value on y)
h	Height of image (inches) ( only useful if plotting)

Value

A heatmap of the reads in the analysis stage chosen

Examples

cds = makeExamplernaCrosslinkDataSet()

plotMatrices(cds,
            b = rnaSize(cds),
            d = rnaSize(cds))

JLP-BioInf/comradesOO documentation built on April 28, 2024, 4:22 a.m.