bsj.counts: Accessor for the backsplice junction count data

In KasperThystrup/circulaR: Characterization of circRNAs from Total RNA-seq data

Description

circSample and circExperiment class accessors for showing the backsplice junction count data

Usage

bsj.counts(object, returnAs = "list", ...)

Arguments

object	circSample or circExperiment object
returnAs	Determines if output should be list (default) or GRanges (GRangesList for circExperiment objects)
use.names	Boolean. If TRUE, the list being returned will be named using sample IDs

Value

List of datatable(s) with backsplice junction count data

Examples

# A datatable of the backsplice junction count data in a sample object
#bsj.counts(sample.object)

# A datatable of the backsplice junction count data in each sample of an experiment
#bsj.counts(experiment.object)

KasperThystrup/circulaR documentation built on March 14, 2021, 12:44 p.m.