cigar2covr: Function to return covered chromosomal positions from a start...
In KasperThystrup/circulaR: Characterization of circRNAs from Total RNA-seq data
View source: R/helper_functions.r
Description
Function to return covered chromosomal positions from a start position and CIGAR string
Usage
1
cigar2covr(first.pos = NULL, cigar = NULL)
Arguments
first.pos
Genomic position where the CIGAR string starts (from 11th or 13th column in the Chimeric.out.junction file)
cigar
CIGAR string (from 12th or 14th column in the Chimeric.out.junction file)
KasperThystrup/circulaR documentation built on March 14, 2021, 12:44 p.m.
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View source: R/helper_functions.r
Description
Function to return covered chromosomal positions from a start position and CIGAR string
Usage
1 | cigar2covr(first.pos = NULL, cigar = NULL)
|
Arguments
first.pos |
Genomic position where the CIGAR string starts (from 11th or 13th column in the Chimeric.out.junction file) |
cigar |
CIGAR string (from 12th or 14th column in the Chimeric.out.junction file) |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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