constructSJDB: Construct a database of known splice junctions from a...
In KasperThystrup/circulaR: Characterization of circRNAs from Total RNA-seq data
Description
This function takes an annotation database, either downloaded from AnnotationHub
or generated using makeTxDbFromBiomart (GenomicFeatures) and extracts all junction sites and transcript termini.
Usage
1
constructSJDB(annotationDB, force = FALSE)
Arguments
annotationDB
A TxDb or EnsDb object
force
Boolean (default = FALSE) indicating whether or not to overwrite any cached version splice junction database.
KasperThystrup/circulaR documentation built on March 14, 2021, 12:44 p.m.
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Description
This function takes an annotation database, either downloaded from AnnotationHub or generated using makeTxDbFromBiomart (GenomicFeatures) and extracts all junction sites and transcript termini.
Usage
1 | constructSJDB(annotationDB, force = FALSE)
|
Arguments
annotationDB |
A TxDb or EnsDb object |
force |
Boolean (default = FALSE) indicating whether or not to overwrite any cached version splice junction database. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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