generateJunctionMotifs: Generate junction motifs
In KasperThystrup/circulaR: Characterization of circRNAs from Total RNA-seq data
Description
Usage
Arguments
Value
Examples
Description
Generates splice motif sequences and adds them t the backsplice junction datatable
Usage
1
generateJunctionMotifs(object, genome_seq, cores = 1L)
Arguments
object
A circSample or circExperiment object
genome_seq
A BSGenome object used for determining the sequences for splice motifs
Value
an updated circSample or circExperiment object
Examples
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# Do not run
# Setup circSample or circExperiment object
#object <- circSample(...)
# Load relevant data
#...
# Generate motifs
#object <- generateJunctionMotifs(object)
KasperThystrup/circulaR documentation built on March 14, 2021, 12:44 p.m.
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Description Usage Arguments Value Examples
Description
Generates splice motif sequences and adds them t the backsplice junction datatable
Usage
1 | generateJunctionMotifs(object, genome_seq, cores = 1L)
|
Arguments
object |
A circSample or circExperiment object |
genome_seq |
A BSGenome object used for determining the sequences for splice motifs |
Value
an updated circSample or circExperiment object
Examples
1 2 3 4 5 6 7 | # Do not run
# Setup circSample or circExperiment object
#object <- circSample(...)
# Load relevant data
#...
# Generate motifs
#object <- generateJunctionMotifs(object)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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